Publications
The following are some of the publications based on the work undertaken using FLAME.
2012
- Mike Holcombe, Salem Adra, Mesude Bicak, Shawn Chin, Simon Coakley, Alison I. Graham, Jeffrey Green, Chris Greenough, Duncan Jackson, Mariam Kiran, Sheila MacNeil, Afsaneh Maleki-Dizaji, Phil McMinn, Mark Pogson, Robert Poole, Eva Qwarnstrom, Francis Ratnieks, Matthew D. Rolfe, Rod Smallwood, Tao Sun and David Worth, Modelling complex biological systems using an agent-based approach, Integrative Biology
2011
- Mark Burkitt, Dawn Walker, Daniela Romano and Alireza Fazeli, Modelling sperm behaviour in a 3D environment, Proceedings of the 9th International Conference on Computational Methods in Systems Biology
- Sander van der Hoog and Christophe Deissenberg, Energy Shocks and Macroeconomic Stabilization Policies in an Agent-Based Macro Model, Computational Methods in Economic Dynamics
- G. Muneeswari and K. L. Shunmuganathan, A Novel Hard-Soft Processor Affinity Scheduling for Multicore Architecture using Multiagents, European Journal of Scientific Research
2010
- Mariam Kiran, Paul Richmond, Mike Holcombe, Lee Shawn Chin, David Worth and Chris Greenough, FLAME: simulating large populations of agents on parallel hardware architectures, Proceedings of the 9th International Conference on Autonomous Agents and Multiagent Systems
- Paul Richmond, Dawn Walker, Simon Coakley and Daniela Romano, High performance cellular level agent-based simulation with FLAME for the GPU, Briefing in Bioinformatics
- Salem Adra, Tao Sun, Shelia MacNeil, Mike Holcombe and Rod Smallwood, Development of a three dimensional multiscale computational model of the human epidermis, PLoS ONE
2009
- Paul Richmond, Simon Coakley and Daniela Romano, A high performance agent based modelling framework on graphics card hardware with CUDA, Proceedings of The 8th International Conference on Autonomous Agents and Multiagent Systems
- Paul Richmond, Simon Coakley and Daniela Romano, Cellular level agent based modelling on the graphics processing unit, Proceedings of the 2009 International Workshop on High Performance Computational Systems Biology
- Dawn Walker and Jennifer Southgate, The virtual cell—a candidate co-ordinator for ‘middle-out’ modelling of biological systems, Briefings in Bioinformatics
- Tao Sun, Salem Adra, Rod Smallwood, Mike Holcombe, Sheila MacNeil, Exploring hypotheses of the actions of TGF-β1 in epidermal wound healing using 3D computational multiscale model of the human epidermis, PLoS ONE
2008
- Christophe Deissenberg, Sander van der Hoog and Herbert Dawid, EURACE: A massively parallel agent-based model of the European economy, Applied Mathematics and Computation
- Tao Sun, Phil McMinn, Mike Holcombe, Rod Smallwood and Sheila MacNeil, Agent Based Modelling Helps in Understanding the Rules by Which Fibroblasts Support Keratinocyte Colony Formation, PLoS ONE
- Mariam Kiran, Simon Coakley, Neil Walkinshaw, Phil McMinn, Mike Holcombe, Validation and discovery from computational biology models, Biosystems
2007
- Tao Sun, Phil McMinn, Simon Coakley, Mike Holcombe, Rod Smallwood and Sheila MacNeil, An integrated systems biology approach to understanding the rules of keratinocyte colony formation, J.R. Soc. Interface
2006
- Simon Coakley, Rod Smallwood and Mike Holcombe, From molecules to insect communities-How formal agent based computational modelling is uncovering new biological facts, Scientiae Mathematicae Japonicae
- Mike Holcombe, Simon Coakley, Rod Smallwood, A General Framework for agent-based modelling of complex systems, Proceedings of the 2006 European Conference on Complex Systems
- Simon Coakley, Rod Smallwood and Mike Holcombe, Using X-Machines as a formal basis for describing agents in agent-based modelling, Proceedings of the 2006 Agent-Directed Simulation Conference